BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB015A12LP1|AL426780
(313 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig848 339 2e-93
>3x_Contig848
Length = 3091
Score = 339 bits (171), Expect = 2e-93
Identities = 247/273 (90%)
Strand = Plus / Plus
Query: 41 gcccaattctggatcgctttgttcccaattggtggtaaaccgagtnctgcagcattcttc 100
|||||||||||||||||||||||||||||||||| |||||| ||| | | || ||||||
Sbjct: 384 gcccaattctggatcgctttgttcccaattggtgataaaccaagtgcatctgccttcttc 443
Query: 101 gaagcttacttatctttcccaatttacatcgtattctacatcggtcataagatctggaag 160
||||||||| |||| |||||||| | || | |||||||||||||| ||||||||||||
Sbjct: 444 gaagcttacctatcgttcccaatcttgattgcgttctacatcggtcacaagatctggaag 503
Query: 161 aaaaactggaagttgttcatcaaagcttcggatattgatattgattctggtagaagagaa 220
||||||||||||||||| |||| ||| | |||||||||| ||| ||||||||||||||
Sbjct: 504 aaaaactggaagttgtttatcagagccaagaatattgatatcgatactggtagaagagaa 563
Query: 221 actgacatcgaagctttgaagcaagaaattgccgaagaaaaggcttttatcgcttccaaa 280
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actgacatcgaagctttgaaacaagaaattgccgaagaaaaggcttttatcgcttccaaa 623
Query: 281 ccattntactacagaatgtacaagttctggtgt 313
||||| |||||||||||||||||||||||||||
Sbjct: 624 ccattctactacagaatgtacaagttctggtgt 656
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2671
Number of Sequences: 1807
Number of extensions: 2671
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 313
length of database: 10,358,551
effective HSP length: 16
effective length of query: 297
effective length of database: 10,329,639
effective search space: 3067902783
effective search space used: 3067902783
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)